PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma52g01380.1
Common NameZOSMA_52G01380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 492aa    MW: 53816.6 Da    PI: 6.8442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma52g01380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09309357355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Zosma52g01380.1 309 NSHSLAERVRREKISERMKFLQDLVPGC-----TKvTGKAVMLDEIINYVQSLQ 357
                      58*************************9.....78899***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17304375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-11304361No hitNo description
PROSITE profilePS5088815.25306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16307371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6309357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDLSDKGKFG LNKDGDGDVD LKYQHQHQHQ HQHQHQHRRR PYPPPSMSPP PSGISADWQR  60
GLIPVTTTVT TTPWEHHPAS TSENLGFPLN DDGSASSADN NGLIVKPVPG NWNHPPPGIG  120
ILSSGLSQFP ADSAFIERAA RFSYFGNGNF TSMLAPFDSS NPYLNSAGVA LMAGQPPPPQ  180
RSEPPNIARE GGSKDLIASG QGGSNVGSPM NSEKDISAGD NRGDVEVSGS GREDNRSKGT  240
AARKRKWNNN SKKEMEIDKS NEEHQNKEEE NKSNLAINNK NSGKQAKEVL DPPKEDYIHV  300
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCTKVT GKAVMLDEII NYVQSLQRQV  360
EFLSMKLSAV DPQLDFNLGL LSKDMVQARA SSSSVIGFQP DLVNSFQHPN TQGLMQLGNS  420
GYGPPPDAFR RTINAQLTAI NTFKETKHQM PNSLDEDLHN VLSQMGFGNN APSLNIQESN  480
DNKSCDDSFP M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943352.11e-110PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A0K9NXS30.0A0A0K9NXS3_Z
STRINGVIT_01s0010g00740.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-78bHLH family protein